IL_4V65_165
3D structure
- PDB id
- 4V65 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E. coli ribosome in the Pre-accommodation state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GUGUAG*CGUAGAGAU
- Length
- 15 nucleotides
- Bulged bases
- 4V65|1|A1|A|687, 4V65|1|A1|A|702
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V65_165 not in the Motif Atlas
- Homologous match to IL_4LFB_031
- Geometric discrepancy: 0.573
- The information below is about IL_4LFB_031
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_95727.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
4V65|1|A1|G|683
4V65|1|A1|U|684
4V65|1|A1|G|685
4V65|1|A1|U|686
4V65|1|A1|A|687
4V65|1|A1|G|688
*
4V65|1|A1|C|699
4V65|1|A1|G|700
4V65|1|A1|U|701
4V65|1|A1|A|702
4V65|1|A1|G|703
4V65|1|A1|A|704
4V65|1|A1|G|705
4V65|1|A1|A|706
4V65|1|A1|U|707
Current chains
- Chain A1
- 16S rRNA
Nearby chains
- Chain AC
- 30S ribosomal protein S11
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: