IL_4V66_007

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4V66|1|A1|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V66_007 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.3949

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

4V66|1|A1|G|147
4V66|1|A1|G|148
4V66|1|A1|A|149
4V66|1|A1|U|150
4V66|1|A1|A|151
4V66|1|A1|A|152
4V66|1|A1|C|153
*
4V66|1|A1|G|168
4V66|1|A1|C|169
4V66|1|A1|U|170
4V66|1|A1|A|171
4V66|1|A1|A|172
4V66|1|A1|U|173
4V66|1|A1|A|174
4V66|1|A1|C|175

Current chains

Chain A1

16S rRNA

Nearby chains

Chain AN

30S ribosomal protein S20