IL_4V66_039

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

4V66|1|A1|A|1196

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V66_039 not in the Motif Atlas

Homologous match to IL_6CZR_156

Geometric discrepancy: 0.5065

The information below is about IL_6CZR_156

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4V66|1|A1|U|1060
4V66|1|A1|G|1061
*
4V66|1|A1|C|1195
4V66|1|A1|A|1196
4V66|1|A1|A|1197

Current chains

Chain A1

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S14

Chain AM

mRNA model

Chain AS

30S ribosomal protein S5

Chain AX

30S ribosomal protein S10