IL_4V66_106

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UUGA*UCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V66_106 not in the Motif Atlas

Geometric match to IL_422D_001

Geometric discrepancy: 0.3995

The information below is about IL_422D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_13404.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

4V66|1|BB|U|2085
4V66|1|BB|U|2086
4V66|1|BB|G|2087
4V66|1|BB|A|2088
*
4V66|1|BB|U|2231
4V66|1|BB|C|2232
4V66|1|BB|U|2233
4V66|1|BB|G|2234

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BN

50S ribosomal protein L2

Chain BS

50S ribosomal protein L31