IL_4V66_117

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

4V66|1|BB|G|2777

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V66_117 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.5788

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4V66|1|BB|C|2636
4V66|1|BB|U|2637
4V66|1|BB|G|2638
4V66|1|BB|A|2639
4V66|1|BB|G|2640
*
4V66|1|BB|C|2774
4V66|1|BB|G|2775
4V66|1|BB|A|2776
4V66|1|BB|G|2777
4V66|1|BB|A|2778
4V66|1|BB|U|2779
4V66|1|BB|G|2780
4V66|1|BB|A|2781
4V66|1|BB|G|2782

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B6

50S ribosomal protein L13

Chain BY

50S ribosomal protein L3