IL_4V66_118

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V66_118 not in the Motif Atlas

Homologous match to IL_7RQB_103

Geometric discrepancy: 0.2817

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V66|1|BB|C|2652
4V66|1|BB|U|2653
4V66|1|BB|A|2654
4V66|1|BB|G|2655
4V66|1|BB|U|2656
4V66|1|BB|A|2657
4V66|1|BB|C|2658
*
4V66|1|BB|G|2663
4V66|1|BB|G|2664
4V66|1|BB|A|2665
4V66|1|BB|C|2666
4V66|1|BB|C|2667
4V66|1|BB|G|2668

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B3

50S ribosomal protein L6

Chain BD

50S ribosomal protein L14