IL_4V66_134

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CAG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V66_134 not in the Motif Atlas

Geometric match to IL_4M4O_001

Geometric discrepancy: 0.3354

The information below is about IL_4M4O_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V66|1|A1|C|783
4V66|1|A1|A|784
4V66|1|A1|G|785
*
4V66|1|A1|C|797
4V66|1|A1|U|798
4V66|1|A1|G|799

Current chains

Chain A1

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S11

Chain AQ

30S ribosomal protein S21

Chain BB

Large subunit ribosomal RNA; LSU rRNA