IL_4V66_162

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GUUG*CAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V66_162 not in the Motif Atlas

Geometric match to IL_1IHA_001

Geometric discrepancy: 0.3525

The information below is about IL_1IHA_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_13404.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

4V66|1|BB|G|2290
4V66|1|BB|U|2291
4V66|1|BB|U|2292
4V66|1|BB|G|2293
*
4V66|1|BB|C|2339
4V66|1|BB|A|2340
4V66|1|BB|G|2341
4V66|1|BB|C|2342

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B2

50S ribosomal protein L5

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BH

50S ribosomal protein L18