IL_4V66_169

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4V66|1|A1|G|530, 4V66|1|A1|A|532, 4V66|1|A1|U|534, 4V66|1|A1|A|535

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V66_169 not in the Motif Atlas

Homologous match to IL_6CZR_133

Geometric discrepancy: 0.4809

The information below is about IL_6CZR_133

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.3

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V66|1|A1|G|515
4V66|1|A1|U|516
4V66|1|A1|G|517
4V66|1|A1|C|518
4V66|1|A1|C|519
4V66|1|A1|A|520
4V66|1|A1|G|521
*
4V66|1|A1|C|528
4V66|1|A1|G|529
4V66|1|A1|G|530
4V66|1|A1|U|531
4V66|1|A1|A|532
4V66|1|A1|A|533
4V66|1|A1|U|534
4V66|1|A1|A|535
4V66|1|A1|C|536

Current chains

Chain A1

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S12

Chain AM

mRNA model

Chain AO

30S ribosomal protein S3