IL_4V68_009

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

GGACAAC*GCUAAUCC

Length

15 nucleotides

Bulged bases

4V68|1|AA|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_009 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.235

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

4V68|1|AA|G|147
4V68|1|AA|G|148
4V68|1|AA|A|149
4V68|1|AA|C|150
4V68|1|AA|A|151
4V68|1|AA|A|152
4V68|1|AA|C|153
*
4V68|1|AA|G|168
4V68|1|AA|C|169
4V68|1|AA|U|170
4V68|1|AA|A|171
4V68|1|AA|A|172
4V68|1|AA|U|173
4V68|1|AA|C|174
4V68|1|AA|C|175

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

30S ribosomal protein S20