IL_4V68_011

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

4V68|1|AA|U|244, 4V68|1|AA|C|280

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_011 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0893

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

4V68|1|AA|C|242
4V68|1|AA|A|243
4V68|1|AA|U|244
4V68|1|AA|C|245
4V68|1|AA|A|246
4V68|1|AA|G|247
*
4V68|1|AA|C|277
4V68|1|AA|G|278
4V68|1|AA|A|279
4V68|1|AA|C|280
4V68|1|AA|G|281
4V68|1|AA|A|282
4V68|1|AA|C|283
4V68|1|AA|G|284

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AQ

30S ribosomal protein S17