IL_4V68_031

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

4V68|1|AA|A|702

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_031 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.1166

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4V68|1|AA|G|683
4V68|1|AA|A|684
4V68|1|AA|G|685
4V68|1|AA|U|686
4V68|1|AA|A|687
4V68|1|AA|G|688
*
4V68|1|AA|C|699
4V68|1|AA|G|700
4V68|1|AA|C|701
4V68|1|AA|A|702
4V68|1|AA|G|703
4V68|1|AA|A|704
4V68|1|AA|U|705
4V68|1|AA|A|706
4V68|1|AA|C|707

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain BA

Large subunit ribosomal RNA; LSU rRNA