IL_4V68_034

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_034 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.072

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V68|1|AA|G|887
4V68|1|AA|G|888
4V68|1|AA|A|889
4V68|1|AA|G|890
4V68|1|AA|U|891
4V68|1|AA|A|892
4V68|1|AA|C|893
4V68|1|AA|G|894
*
4V68|1|AA|U|905
4V68|1|AA|G|906
4V68|1|AA|A|907
4V68|1|AA|A|908
4V68|1|AA|A|909
4V68|1|AA|C|910

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AQ

30S ribosomal protein S17

Chain BA

Large subunit ribosomal RNA; LSU rRNA