IL_4V68_044
3D structure
- PDB id
- 4V68 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.4 Å
Loop
- Sequence
- GG*UCAGC
- Length
- 7 nucleotides
- Bulged bases
- 4V68|1|AA|C|1200, 4V68|1|AA|A|1201
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V68_044 not in the Motif Atlas
- Homologous match to IL_4LFB_045
- Geometric discrepancy: 0.077
- The information below is about IL_4LFB_045
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_24264.1
- Basepair signature
- cWW-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V68|1|AA|G|1057
4V68|1|AA|G|1058
*
4V68|1|AA|U|1199
4V68|1|AA|C|1200
4V68|1|AA|A|1201
4V68|1|AA|G|1202
4V68|1|AA|C|1203
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AC
- 30S ribosomal protein S3
- Chain AJ
- 30S ribosomal protein S10
- Chain AN
- 30S ribosomal protein S14
- Chain AY
- Transfer RNA; tRNA
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