IL_4V68_070

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CGAAUC*GAUAG

Length

11 nucleotides

Bulged bases

4V68|1|BA|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_070 not in the Motif Atlas

Geometric match to IL_2QWY_007

Geometric discrepancy: 0.3841

The information below is about IL_2QWY_007

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V68|1|BA|C|280
4V68|1|BA|G|281
4V68|1|BA|A|282
4V68|1|BA|A|283
4V68|1|BA|U|284
4V68|1|BA|C|285
*
4V68|1|BA|G|356
4V68|1|BA|A|357
4V68|1|BA|U|358
4V68|1|BA|A|359
4V68|1|BA|G|360

Current chains

Chain BA

23S rRNA

Nearby chains