IL_4V68_071

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CCCCAG*UGGGGGG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_071 not in the Motif Atlas

Geometric match to IL_6DVK_004

Geometric discrepancy: 0.3344

The information below is about IL_6DVK_004

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V68|1|BA|C|285
4V68|1|BA|C|286
4V68|1|BA|C|287
4V68|1|BA|C|288
4V68|1|BA|A|289
4V68|1|BA|G|290
*
4V68|1|BA|U|350
4V68|1|BA|G|351
4V68|1|BA|G|352
4V68|1|BA|G|353
4V68|1|BA|G|354
4V68|1|BA|G|355
4V68|1|BA|G|356

Current chains

Chain BA

23S rRNA

Nearby chains