IL_4V68_077

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V68|1|BA|G|801, 4V68|1|BA|G|805

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_077 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.0735

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

4V68|1|BA|G|674
4V68|1|BA|A|675
4V68|1|BA|A|676
4V68|1|BA|A|677
4V68|1|BA|C|678
*
4V68|1|BA|G|799
4V68|1|BA|A|800
4V68|1|BA|G|801
4V68|1|BA|A|802
4V68|1|BA|U|803
4V68|1|BA|A|804
4V68|1|BA|G|805
4V68|1|BA|C|806

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BP

50S ribosomal protein L15