IL_4V68_080

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_080 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.0695

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4V68|1|BA|U|703
4V68|1|BA|G|704
4V68|1|BA|A|705
4V68|1|BA|A|706
4V68|1|BA|G|707
*
4V68|1|BA|U|724
4V68|1|BA|G|725
4V68|1|BA|G|726
4V68|1|BA|A|727
4V68|1|BA|G|728

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L2