IL_4V68_098
3D structure
- PDB id
- 4V68 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.4 Å
Loop
- Sequence
- GAUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 4V68|1|BA|U|1033
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V68_098 not in the Motif Atlas
- Homologous match to IL_4WF9_041
- Geometric discrepancy: 0.137
- The information below is about IL_4WF9_041
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
4V68|1|BA|G|1031
4V68|1|BA|A|1032
4V68|1|BA|U|1033
4V68|1|BA|G|1034
*
4V68|1|BA|C|1121
4V68|1|BA|G|1122
4V68|1|BA|C|1123
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain B9
- 50S ribosomal protein L36
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain BH
- 50S ribosomal protein L6
- Chain BQ
- 50S ribosomal protein L16
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