IL_4V68_101

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

4V68|1|BA|A|1088, 4V68|1|BA|G|1089

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_101 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.3385

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4V68|1|BA|G|1087
4V68|1|BA|A|1088
4V68|1|BA|G|1089
4V68|1|BA|U|1090
4V68|1|BA|G|1091
*
4V68|1|BA|C|1100
4V68|1|BA|U|1101
4V68|1|BA|C|1102

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B9

50S ribosomal protein L36

Chain BL

50S ribosomal protein L11