IL_4V68_104
3D structure
- PDB id
- 4V68 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.4 Å
Loop
- Sequence
- CGAUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 4V68|1|BA|U|1211
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V68_104 not in the Motif Atlas
- Homologous match to IL_7RQB_047
- Geometric discrepancy: 0.1087
- The information below is about IL_7RQB_047
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 28
Unit IDs
4V68|1|BA|C|1208
4V68|1|BA|G|1209
4V68|1|BA|A|1210
4V68|1|BA|U|1211
4V68|1|BA|G|1212
4V68|1|BA|A|1213
4V68|1|BA|A|1214
4V68|1|BA|G|1215
*
4V68|1|BA|U|1234
4V68|1|BA|G|1235
4V68|1|BA|G|1236
4V68|1|BA|A|1237
4V68|1|BA|G|1238
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain BU
- 50S ribosomal protein L20
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