IL_4V68_122

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

4V68|1|BA|G|1992

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_122 not in the Motif Atlas

Geometric match to IL_7RQB_067

Geometric discrepancy: 0.0839

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

4V68|1|BA|A|1669
4V68|1|BA|C|1670
4V68|1|BA|U|1671
4V68|1|BA|C|1672
4V68|1|BA|U|1673
4V68|1|BA|G|1674
*
4V68|1|BA|C|1990
4V68|1|BA|U|1991
4V68|1|BA|G|1992
4V68|1|BA|U|1993

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BO

50S ribosomal protein L14