IL_4V68_130

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_130 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.1026

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4V68|1|BA|G|1856
4V68|1|BA|G|1857
4V68|1|BA|G|1858
4V68|1|BA|A|1859
4V68|1|BA|G|1860
*
4V68|1|BA|C|1882
4V68|1|BA|G|1883
4V68|1|BA|A|1884
4V68|1|BA|A|1885
4V68|1|BA|C|1886

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain B1

50S ribosomal protein L28

Chain BC

50S ribosomal protein L1