IL_4V68_140

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4V68|1|BA|G|2116

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_140 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2143

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

4V68|1|BA|G|2110
4V68|1|BA|C|2111
4V68|1|BA|G|2112
4V68|1|BA|U|2113
4V68|1|BA|A|2114
4V68|1|BA|G|2115
4V68|1|BA|G|2116
4V68|1|BA|A|2117
4V68|1|BA|U|2118
4V68|1|BA|A|2119
4V68|1|BA|G|2120
*
4V68|1|BA|C|2178
4V68|1|BA|C|2179

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain BC

50S ribosomal protein L1