IL_4V68_154

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

4V68|1|BA|A|2542

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_154 not in the Motif Atlas

Homologous match to IL_4WF9_097

Geometric discrepancy: 0.1129

The information below is about IL_4WF9_097

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

4V68|1|BA|U|2522
4V68|1|BA|G|2523
*
4V68|1|BA|C|2540
4V68|1|BA|A|2541
4V68|1|BA|A|2542
4V68|1|BA|G|2543

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B9

50S ribosomal protein L36