IL_4V68_179

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CCGGGAG*CAGG

Length

11 nucleotides

Bulged bases

4V68|1|AA|G|1442|||A

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V68_179 not in the Motif Atlas

Geometric match to IL_3NPQ_006

Geometric discrepancy: 0.2868

The information below is about IL_3NPQ_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93503.1

Basepair signature

cWW-cWW-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4V68|1|AA|C|1439
4V68|1|AA|C|1440
4V68|1|AA|G|1441
4V68|1|AA|G|1442
4V68|1|AA|G|1442|||A
4V68|1|AA|A|1442|||B
4V68|1|AA|G|1443
*
4V68|1|AA|C|1459
4V68|1|AA|A|1460
4V68|1|AA|G|1461
4V68|1|AA|G|1462

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

30S ribosomal protein S20

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BT

50S ribosomal protein L19