IL_4V69_040

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V69_040 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0886

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V69|1|AA|G|887
4V69|1|AA|G|888
4V69|1|AA|A|889
4V69|1|AA|G|890
4V69|1|AA|U|891
4V69|1|AA|A|892
4V69|1|AA|C|893
4V69|1|AA|G|894
*
4V69|1|AA|U|905
4V69|1|AA|A|906
4V69|1|AA|A|907
4V69|1|AA|A|908
4V69|1|AA|A|909
4V69|1|AA|C|910

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12