IL_4V69_085

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V69_085 not in the Motif Atlas

Geometric match to IL_4WF9_017

Geometric discrepancy: 0.135

The information below is about IL_4WF9_017

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

4V69|1|BB|C|564
4V69|1|BB|C|565
4V69|1|BB|U|566
*
4V69|1|BB|A|575
4V69|1|BB|U|576
4V69|1|BB|G|577

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BL

50S ribosomal protein L15

Chain BQ

50S ribosomal protein L20

Chain BR

50S ribosomal protein L21