IL_4V69_088

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V69|1|BB|G|801, 4V69|1|BB|G|805

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V69_088 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1274

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V69|1|BB|G|674
4V69|1|BB|A|675
4V69|1|BB|A|676
4V69|1|BB|A|677
4V69|1|BB|C|678
*
4V69|1|BB|G|799
4V69|1|BB|A|800
4V69|1|BB|G|801
4V69|1|BB|A|802
4V69|1|BB|U|803
4V69|1|BB|A|804
4V69|1|BB|G|805
4V69|1|BB|C|806

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15