IL_4V69_120

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

4V69|1|BB|G|1332

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V69_120 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.1648

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

4V69|1|BB|C|1319
4V69|1|BB|C|1320
4V69|1|BB|A|1321
4V69|1|BB|A|1322
4V69|1|BB|C|1323
*
4V69|1|BB|G|1331
4V69|1|BB|G|1332
4V69|1|BB|G|1333

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L22