IL_4V69_136

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4V69|1|BB|G|1699

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V69_136 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.1309

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4V69|1|BB|C|1686
4V69|1|BB|G|1687
4V69|1|BB|U|1688
4V69|1|BB|A|1689
4V69|1|BB|A|1690
4V69|1|BB|C|1691
*
4V69|1|BB|G|1696
4V69|1|BB|G|1697
4V69|1|BB|A|1698
4V69|1|BB|G|1699
4V69|1|BB|A|1700
4V69|1|BB|A|1701
4V69|1|BB|G|1702

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2