IL_4V69_147

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4V69|1|BB|A|1938, 4V69|1|BB|U|1944

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V69_147 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.2122

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

4V69|1|BB|C|1934
4V69|1|BB|G|1935
4V69|1|BB|A|1936
4V69|1|BB|A|1937
4V69|1|BB|A|1938
4V69|1|BB|U|1939
4V69|1|BB|U|1940
4V69|1|BB|C|1941
4V69|1|BB|C|1942
4V69|1|BB|U|1943
4V69|1|BB|U|1944
4V69|1|BB|G|1945
*
4V69|1|BB|C|1961
4V69|1|BB|C|1962
4V69|1|BB|U|1963
4V69|1|BB|G|1964

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA