IL_4V69_176

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

4V69|1|BB|A|2765

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V69_176 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.1487

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V69|1|BB|G|2737
4V69|1|BB|A|2738
4V69|1|BB|U|2739
4V69|1|BB|A|2740
4V69|1|BB|A|2741
4V69|1|BB|G|2742
*
4V69|1|BB|C|2762
4V69|1|BB|G|2763
4V69|1|BB|A|2764
4V69|1|BB|A|2765
4V69|1|BB|A|2766
4V69|1|BB|C|2767

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BG

50S ribosomal protein L6

Chain BJ

50S ribosomal protein L13