IL_4V6D_027

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4V6D|1|AA|A|532, 4V6D|1|AA|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6D_027 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1454

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V6D|1|AA|G|515
4V6D|1|AA|U|516
4V6D|1|AA|G|517
4V6D|1|AA|C|518
4V6D|1|AA|C|519
4V6D|1|AA|A|520
4V6D|1|AA|G|521
*
4V6D|1|AA|C|528
4V6D|1|AA|G|529
4V6D|1|AA|G|530
4V6D|1|AA|U|531
4V6D|1|AA|A|532
4V6D|1|AA|A|533
4V6D|1|AA|U|534
4V6D|1|AA|A|535
4V6D|1|AA|C|536

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12