3D structure

PDB id
4V6D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
Experimental method
X-RAY DIFFRACTION
Resolution
3.81 Å

Loop

Sequence
UGAAAUCC*GAACUG
Length
14 nucleotides
Bulged bases
4V6D|1|AA|U|632
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6D_032 not in the Motif Atlas
Homologous match to IL_5J7L_030
Geometric discrepancy: 0.101
The information below is about IL_5J7L_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

4V6D|1|AA|U|605
4V6D|1|AA|G|606
4V6D|1|AA|A|607
4V6D|1|AA|A|608
4V6D|1|AA|A|609
4V6D|1|AA|U|610
4V6D|1|AA|C|611
4V6D|1|AA|C|612
*
4V6D|1|AA|G|628
4V6D|1|AA|A|629
4V6D|1|AA|A|630
4V6D|1|AA|C|631
4V6D|1|AA|U|632
4V6D|1|AA|G|633

Current chains

Chain AA
16S rRNA

Nearby chains

Chain AD
30S ribosomal protein S4
Chain AH
30S ribosomal protein S8
Chain AP
30S ribosomal protein S16
Chain AQ
30S ribosomal protein S17

Coloring options:


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