3D structure

PDB id
4V6D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
Experimental method
X-RAY DIFFRACTION
Resolution
3.81 Å

Loop

Sequence
AGAAUU*AGGAAU
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6D_216 not in the Motif Atlas
Homologous match to IL_5J7L_034
Geometric discrepancy: 0.1083
The information below is about IL_5J7L_034
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04668.2
Basepair signature
cWW-cWW-cWW-L-R-L-R-cWW
Number of instances in this motif group
8

Unit IDs

4V6D|1|CA|A|673
4V6D|1|CA|G|674
4V6D|1|CA|A|675
4V6D|1|CA|A|676
4V6D|1|CA|U|677
4V6D|1|CA|U|678
*
4V6D|1|CA|A|712
4V6D|1|CA|G|713
4V6D|1|CA|G|714
4V6D|1|CA|A|715
4V6D|1|CA|A|716
4V6D|1|CA|U|717

Current chains

Chain CA
16S rRNA

Nearby chains

Chain CF
30S ribosomal protein S6
Chain CK
30S ribosomal protein S11
Chain CR
30S ribosomal protein S18
Chain CU
30S ribosomal protein S21
Chain DC
50S ribosomal protein L2

Coloring options:


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