IL_4V6D_290

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4V6D|1|DA|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6D_290 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1701

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4V6D|1|DA|C|1208
4V6D|1|DA|U|1209
4V6D|1|DA|G|1210
4V6D|1|DA|C|1211
4V6D|1|DA|G|1212
4V6D|1|DA|A|1213
4V6D|1|DA|A|1214
4V6D|1|DA|G|1215
*
4V6D|1|DA|U|1234
4V6D|1|DA|G|1235
4V6D|1|DA|G|1236
4V6D|1|DA|A|1237
4V6D|1|DA|G|1238

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DQ

50S ribosomal protein L20