IL_4V6D_313
3D structure
- PDB id
- 4V6D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.81 Å
Loop
- Sequence
- UGCAAAC*GGACGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 4V6D|1|DA|A|1801, 4V6D|1|DA|C|1816, 4V6D|1|DA|U|1820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6D_313 not in the Motif Atlas
- Homologous match to IL_5J7L_313
- Geometric discrepancy: 0.1051
- The information below is about IL_5J7L_313
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.5
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V6D|1|DA|U|1798
4V6D|1|DA|G|1799
4V6D|1|DA|C|1800
4V6D|1|DA|A|1801
4V6D|1|DA|A|1802
4V6D|1|DA|A|1803
4V6D|1|DA|C|1804
*
4V6D|1|DA|G|1813
4V6D|1|DA|G|1814
4V6D|1|DA|A|1815
4V6D|1|DA|C|1816
4V6D|1|DA|G|1817
4V6D|1|DA|U|1818
4V6D|1|DA|A|1819
4V6D|1|DA|U|1820
4V6D|1|DA|A|1821
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain DC
- 50S ribosomal protein L2
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