IL_4V6D_344

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

4V6D|1|DA|U|2689, 4V6D|1|DA|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6D_344 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.0864

The information below is about IL_5J7L_348

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

4V6D|1|DA|U|2687
4V6D|1|DA|G|2688
4V6D|1|DA|U|2689
4V6D|1|DA|U|2690
4V6D|1|DA|C|2691
*
4V6D|1|DA|G|2718
4V6D|1|DA|G|2719
4V6D|1|DA|U|2720
4V6D|1|DA|A|2721
4V6D|1|DA|G|2722

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DD

50S ribosomal protein L3

Chain DN

50S ribosomal protein L17

Chain DP

50S ribosomal protein L19