IL_4V6I_002
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- UCAAA*UGACAA
- Length
- 11 nucleotides
- Bulged bases
- 4V6I|1|CA|A|468
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_002 not in the Motif Atlas
- Homologous match to IL_4V88_386
- Geometric discrepancy: 0.4377
- The information below is about IL_4V88_386
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_37842.2
- Basepair signature
- cWW-cWW-L-R-cWW-cWW-R-L
- Number of instances in this motif group
- 4
Unit IDs
4V6I|1|CA|U|37
4V6I|1|CA|C|38
4V6I|1|CA|A|39
4V6I|1|CA|A|40
4V6I|1|CA|A|41
*
4V6I|1|CA|U|466
4V6I|1|CA|G|467
4V6I|1|CA|A|468
4V6I|1|CA|C|469
4V6I|1|CA|A|470
4V6I|1|CA|A|471
Current chains
- Chain CA
- 18S rRNA
Nearby chains
- Chain AC
- 40S ribosomal protein rpS9 (S4p)
Coloring options: