IL_4V6I_005

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UCUAA*UG

Length

7 nucleotides

Bulged bases

4V6I|1|CA|C|59, 4V6I|1|CA|U|60, 4V6I|1|CA|A|61

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_005 not in the Motif Atlas

Geometric match to IL_4YAZ_007

Geometric discrepancy: 0.1897

The information below is about IL_4YAZ_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

4V6I|1|CA|U|58
4V6I|1|CA|C|59
4V6I|1|CA|U|60
4V6I|1|CA|A|61
4V6I|1|CA|A|62
*
4V6I|1|CA|U|88
4V6I|1|CA|G|89

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein rpS4 (S4e)