IL_4V6I_007

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GUUAU*AUUUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_007 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3194

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4V6I|1|CA|G|109
4V6I|1|CA|U|110
4V6I|1|CA|U|111
4V6I|1|CA|A|112
4V6I|1|CA|U|113
*
4V6I|1|CA|A|301
4V6I|1|CA|U|302
4V6I|1|CA|U|303
4V6I|1|CA|U|304
4V6I|1|CA|C|305

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein rpS4 (S4e)

Chain AP

40S ribosomal protein rpS11 (S17p)