IL_4V6I_009

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4V6I|1|CA|U|170

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_009 not in the Motif Atlas

Homologous match to IL_8C3A_402

Geometric discrepancy: 0.4097

The information below is about IL_8C3A_402

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.4

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

4V6I|1|CA|G|142
4V6I|1|CA|G|143
4V6I|1|CA|A|145
4V6I|1|CA|U|146
4V6I|1|CA|A|147
4V6I|1|CA|A|148
4V6I|1|CA|C|149
*
4V6I|1|CA|G|165
4V6I|1|CA|C|166
4V6I|1|CA|U|167
4V6I|1|CA|A|168
4V6I|1|CA|A|169
4V6I|1|CA|U|170
4V6I|1|CA|A|171
4V6I|1|CA|C|172

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AU

40S ribosomal protein S24