IL_4V6I_017

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_017 not in the Motif Atlas

Homologous match to IL_4V88_406

Geometric discrepancy: 0.4553

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

4V6I|1|CA|C|411
4V6I|1|CA|A|412
4V6I|1|CA|U|413
*
4V6I|1|CA|A|420
4V6I|1|CA|A|421
4V6I|1|CA|G|422

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AU

40S ribosomal protein S24

Chain BM

60S ribosomal protein rpL23 (L14p)