IL_4V6I_019

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CCAAU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_019 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.164

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

4V6I|1|CA|C|443
4V6I|1|CA|C|444
4V6I|1|CA|A|445
4V6I|1|CA|A|446
4V6I|1|CA|U|447
*
4V6I|1|CA|A|460
4V6I|1|CA|G|461

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein rpS4 (S4e)