IL_4V6I_022
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- AGGGCAAUC*GCU*U
- Length
- 13 nucleotides
- Bulged bases
- 4V6I|1|CA|U|558
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_022 not in the Motif Atlas
- Geometric match to IL_3C3Z_002
- Geometric discrepancy: 0.2621
- The information below is about IL_3C3Z_002
- Detailed Annotation
- Decoding loop related
- Broad Annotation
- Decoding loop related
- Motif group
- IL_31737.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
4V6I|1|CA|A|550
4V6I|1|CA|G|551
4V6I|1|CA|G|552
4V6I|1|CA|G|553
4V6I|1|CA|C|554
4V6I|1|CA|A|555
4V6I|1|CA|A|556
4V6I|1|CA|U|558
4V6I|1|CA|C|559
*
4V6I|1|CA|G|586
4V6I|1|CA|C|587
4V6I|1|CA|U|588
*
4V6I|1|CA|U|588
Current chains
- Chain CA
- 18S rRNA
Nearby chains
- Chain AB
- 40S ribosomal protein rpS3 (S3p)
- Chain AC
- 40S ribosomal protein rpS9 (S4p)
- Chain AE
- 40S ribosomal protein rpS2 (S5p)
- Chain AL
- 40S ribosomal protein rpS23 (S12p)
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