IL_4V6I_029
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- GGUC*GGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_029 not in the Motif Atlas
- Geometric match to IL_5UNE_005
- Geometric discrepancy: 0.3588
- The information below is about IL_5UNE_005
- Detailed Annotation
- tSH-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
4V6I|1|CA|G|871
4V6I|1|CA|G|872
4V6I|1|CA|U|873
4V6I|1|CA|C|874
*
4V6I|1|CA|G|953
4V6I|1|CA|G|954
4V6I|1|CA|A|955
4V6I|1|CA|C|956
Current chains
- Chain CA
- 18S rRNA
Nearby chains
- Chain AO
- 40S ribosomal protein rpS13 (S15p)
- Chain AT
- 40S ribosomal protein rpS21 (S21e)
- Chain AX
- 40S ribosomal protein rpS27 (S27e)
- Chain Bf
- 60S ribosomal protein rpL30 (L30e)
Coloring options: