IL_4V6I_034

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_034 not in the Motif Atlas

Geometric match to IL_4LFB_033

Geometric discrepancy: 0.2082

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4V6I|1|CA|C|990
4V6I|1|CA|G|991
4V6I|1|CA|A|992
4V6I|1|CA|A|993
4V6I|1|CA|G|994
*
4V6I|1|CA|C|1010
4V6I|1|CA|G|1011
4V6I|1|CA|U|1012
4V6I|1|CA|A|1013
4V6I|1|CA|G|1014

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AK

40S ribosomal protein rpS14 (S11p)

Chain BB

60S ribosomal protein rpL2 (L2p)

Chain DA

Large subunit ribosomal RNA; LSU rRNA