IL_4V6I_036

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_036 not in the Motif Atlas

Geometric match to IL_4C7O_002

Geometric discrepancy: 0.2926

The information below is about IL_4C7O_002

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

4V6I|1|CA|G|1051
4V6I|1|CA|U|1052
4V6I|1|CA|G|1053
*
4V6I|1|CA|C|1066
4V6I|1|CA|C|1067

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein rpS0 (S2p)

Chain AT

40S ribosomal protein rpS21 (S21e)

Chain AW

40S ribosomal protein rpS26 (S26e)

Chain AX

40S ribosomal protein rpS27 (S27e)