IL_4V6I_044

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GUGCA*UGC

Length

8 nucleotides

Bulged bases

4V6I|1|CA|G|1273, 4V6I|1|CA|C|1274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_044 not in the Motif Atlas

Geometric match to IL_3KTW_002

Geometric discrepancy: 0.2455

The information below is about IL_3KTW_002

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

4V6I|1|CA|G|1271
4V6I|1|CA|U|1272
4V6I|1|CA|G|1273
4V6I|1|CA|C|1274
4V6I|1|CA|A|1275
*
4V6I|1|CA|U|1437
4V6I|1|CA|G|1438
4V6I|1|CA|C|1439

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AB

40S ribosomal protein rpS3 (S3p)

Chain AJ

40S ribosomal protein rpS20 (S10p)

Chain CC

MRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3')